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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11828948_11829987_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11828948 - 11829987
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTTACATTAATA
Flanking Amino Acid:
LCVAERTYKQRLLFAKLFGH
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
65.4
0.48
1.6
74.56
36.5

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048392
11824613 - 11868631
44019
ENSAPLT00000032328
11814494 - 11868631
54138
ENSAPLT00000020118
11814494 - 11868631
54138
ENSAPLT00000012860
11815824 - 11868631
52808