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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11830261_11831259_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11830261 - 11831259
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATTTCAAAATT
Flanking Amino Acid:
LEISGMIMNRVNSYIPGIGY
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
50.5
0.1
1.9
72.04
39

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032328
11814494 - 11868631
54138
ENSAPLT00000020118
11814494 - 11868631
54138
ENSAPLT00000012860
11815824 - 11868631
52808
ENSAPLT00000048392
11824613 - 11868631
44019