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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11831389_11833161_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11831389 - 11833161
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTACC
5'SS Class:
major
3'SS Sequence:
TTGTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATATCACTAATG
Flanking Amino Acid:
KEYRDDPFHQSHLPWIHSLN
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
70.9
39.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.5
0.75
0.8
76.7
37.4
Minor 5ss
32
-2.1
2.7
38.2
39.5
Minor BPS
49.9
-0.1
2
61.1
40.4

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032328
11814494 - 11868631
54138
ENSAPLT00000020118
11814494 - 11868631
54138
ENSAPLT00000012860
11815824 - 11868631
52808
ENSAPLT00000048392
11824613 - 11868631
44019