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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11833381_11836826_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11833381 - 11836826
Intron Length:
3446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTCT
5'SS Class:
major
3'SS Sequence:
TGAATATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GCTGCATTAATT
Flanking Amino Acid:
HHYKKHYPLEDTPKSGTSCS
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.1
37.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
74.4
0.55
1
70.3
44.4
Minor 5ss
44.8
-0.6
3.2
65.3
46.1
Minor BPS
59.9
0.39
1.7
73.64
43.4

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020118
11814494 - 11868631
54138
ENSAPLT00000012860
11815824 - 11868631
52808
ENSAPLT00000048392
11824613 - 11868631
44019
ENSAPLT00000032328
11814494 - 11868631
54138