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Intron Name: Anas_platyrhynchos_platyrhynchos_1_11836986_11838639_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11836986 - 11838639

Intron Length:

1654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTGCGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TATGTCTTACTA

Flanking Amino Acid:

DTFSNPSHHKDAHRTVTNLS

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

84.6

33.2

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

67.8

0.4

62.5

44.3

Minor 5ss

41.1

-1

2.8

51.8

38.9

Minor BPS

57.1

0.22

1.7

67.46

39.7

Associated Gene:

Gene:

PHTF2

Ensembl Gene ID:

ENSAPLG00000012275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012860

11815824 - 11868631

52808

ENSAPLT00000048392

11824613 - 11868631

44019

ENSAPLT00000032328

11814494 - 11868631

54138

ENSAPLT00000020118

11814494 - 11868631

54138