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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11838842_11843274_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11838842 - 11843274
Intron Length:
4433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
GTTTCAAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GAATCATTAATT
Flanking Amino Acid:
DIWHAAFFLSGSKKAKNSID
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
65.9
0.36
1
57.1
42.6
Minor 5ss
43.7
-0.7
2.5
53.2
43.6
Minor BPS
65.9
0.58
1.6
76.68
39.2

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020118
11814494 - 11868631
54138
ENSAPLT00000012860
11815824 - 11868631
52808
ENSAPLT00000048392
11824613 - 11868631
44019
ENSAPLT00000032328
11814494 - 11868631
54138