About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118398910_118406236_R

Intron Information:

Intron Rank:
138892
Intron Class:
major
Intron Phase:
Intron Coordinates:
118398910 - 118406236
Intron Length:
7327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.8
0.63
0.9
73.7
40.5
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
65.1
0.55
1.4
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022215
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027016
118398577 - 118409329
10753