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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118406342_118408703_R

Intron Information:

Intron Rank:
138893
Intron Class:
major
Intron Phase:
Intron Coordinates:
118406342 - 118408703
Intron Length:
2362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGGCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
67.8
0.55
1.4
70.38
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022215
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027016
118398577 - 118409329
10753