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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118429228_118432797_R

Intron Information:

Intron Rank:
144729
Intron Class:
major
Intron Phase:
Intron Coordinates:
118429228 - 118432797
Intron Length:
3570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.3
0.77
0.8
81.1
35.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
75.7
0.88
1.4
89.43
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023188
118427922 - 118432891
4970