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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118429228_118483539_R

Intron Information:

Intron Rank:
144730
Intron Class:
major
Intron Phase:
Intron Coordinates:
118429228 - 118483539
Intron Length:
54312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.3
0.77
0.8
81.1
35.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
75.7
0.88
1.4
89.43
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042393
118427922 - 118484339
56418