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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11844248_11848782_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11844248 - 11848782
Intron Length:
4535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTG
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAAACTCAACT
Flanking Amino Acid:
FWLLVLYLLQVAAVVLFYTA
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.7
43.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
38.3
-1.3
3.7
54.5
49.7
Minor BPS
60.1
0.39
1.8
79.74
41.3

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012860
11815824 - 11868631
52808
ENSAPLT00000048392
11824613 - 11868631
44019
ENSAPLT00000032328
11814494 - 11868631
54138
ENSAPLT00000020118
11814494 - 11868631
54138