Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11848942_11850202_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11848942 - 11850202

Intron Length:

1261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAAAG

Flanking Amino Acid:

PDLIDVDLVRGSAFAKAKPE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

81.8

38.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.3

0.84

0.9

89.9

23.6

Minor 5ss

38.8

-1.3

3.4

58.1

46.5

Minor BPS

72.6

0.57

1.4

75.95

35.7

Associated Gene:

Gene:

PHTF2

Ensembl Gene ID:

ENSAPLG00000012275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012860

11815824 - 11868631

52808

ENSAPLT00000048392

11824613 - 11868631

44019

ENSAPLT00000032328

11814494 - 11868631

54138

ENSAPLT00000020118

11814494 - 11868631

54138