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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11850273_11852210_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11850273 - 11852210
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTGCATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATCCTGAAAT
Flanking Amino Acid:
EMCSVLHKNFGLRNKPKKTG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.6
0.6
0.9
70.2
39.7
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
67.1
0.61
1.6
80.73
39.9

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020118
11814494 - 11868631
54138