Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11850273_11853633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11850273 - 11853633

Intron Length:

3361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTGCATATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

GTATCCTGAAAT

Flanking Amino Acid:

EQREIKFIRLGLRNKPKKTG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

86.2

29.2

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

76.6

0.6

0.9

70.2

39.7

Minor 5ss

38.5

-1.3

2.8

49.8

40.3

Minor BPS

67.1

0.61

1.6

80.73

39.9

Associated Gene:

Gene:

PHTF2

Ensembl Gene ID:

ENSAPLG00000012275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012860

11815824 - 11868631

52808