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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11853646_11854042_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11853646 - 11854042
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCCTCCTTTATG
Flanking Amino Acid:
EKSVEQREIKFIRLGLRNKP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
84.6
0.86
1
74
41.2
Major PPT
83.7
0.76
0.9
79.9
37.7
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
61.3
0.21
1.7
62.9
45.4

Associated Gene:

Gene:
PHTF2
Ensembl Gene ID:
ENSAPLG00000012275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012860
11815824 - 11868631
52808
ENSAPLT00000020118
11814494 - 11868631
54138