Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118593271_118595414_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118593271 - 118595414

Intron Length:

2144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTAAC

5'SS Class:

major

3'SS Sequence:

ATTTTCCATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTCTTTTAATT

Flanking Amino Acid:

KVLGQGSFGKVFLVKKISGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.2

73.5

37.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.3

0.68

0.9

34.3

Minor 5ss

-2.2

2.8

36.5

40.6

Minor BPS

72.8

0.79

1.1

83.14

31.5

Associated Gene:

Gene:

RPS6KA3

Ensembl Gene ID:

ENSAPLG00000014093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014786

118591778 - 118627694

35917