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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118598488_118600648_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118598488 - 118600648
Intron Length:
2161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGTAAAATAATG
Flanking Amino Acid:
GDLFTRLSKEVMFTEDDVKF
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
43.6
-0.6
2
52.73
41.2

Associated Gene:

Gene:
RPS6KA3
Ensembl Gene ID:
ENSAPLG00000014093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014786
118591778 - 118627694
35917