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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118600756_118603041_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118600756 - 118603041
Intron Length:
2286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
CAATAGTTAAAA
Flanking Amino Acid:
GIIYRDLKPENILLDEEGHI
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
45.4
-0.3
2.2
55.89
42.4

Associated Gene:

Gene:
RPS6KA3
Ensembl Gene ID:
ENSAPLG00000014093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014786
118591778 - 118627694
35917