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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118603080_118603376_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118603080 - 118603376
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCATTTTGAACT
Flanking Amino Acid:
LDEEGHIKLTDFGLSKESID
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.4
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
29
-2.4
2.7
32.5
42.4
Minor BPS
59.2
0.37
1.4
69.88
41

Associated Gene:

Gene:
RPS6KA3
Ensembl Gene ID:
ENSAPLG00000014093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014786
118591778 - 118627694
35917