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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118603520_118606696_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118603520 - 118606696
Intron Length:
3177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTACTCTATA
Flanking Amino Acid:
ADWWSFGVLMFEMLTGTLPF
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.5
0.64
0.9
73.2
36.1
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
52.1
0.06
2
72.75
38.8

Associated Gene:

Gene:
RPS6KA3
Ensembl Gene ID:
ENSAPLG00000014093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014786
118591778 - 118627694
35917