About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118613828_118616003_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118613828 - 118616003
Intron Length:
2176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTTGCTCTTACA
Flanking Amino Acid:
KASNMEYAVKIIDKSKRDPT
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
51
0.02
2.1
71.87
40.1

Associated Gene:

Gene:
RPS6KA3
Ensembl Gene ID:
ENSAPLG00000014093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014786
118591778 - 118627694
35917