Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118626531_118627571_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118626531 - 118627571

Intron Length:

1041

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

ATTCTCACAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATTCTCACAACA

Flanking Amino Acid:

NRQDAPHLVKGAMAATYSAL

Intron Amino Acid Position:

672

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.9

76.1

39.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

69.7

0.44

64.1

Minor 5ss

28.4

-2.5

3.8

45.7

Minor BPS

51.3

0.04

1.8

68.7

36.9

Associated Gene:

Gene:

RPS6KA3

Ensembl Gene ID:

ENSAPLG00000014093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014786

118591778 - 118627694

35917