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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11885259_11886018_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11885259 - 11886018
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCAATCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTGCTTACTC
Flanking Amino Acid:
LFMLSSRNNQTDIKT*
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
67.8
0.4
1
61.5
38.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
62.2
0.36
2
77.77
38.8

Associated Gene:

Gene:
TMEM60
Ensembl Gene ID:
ENSAPLG00000001390
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001379
11881759 - 11886036
4278