Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11885259_11891139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11885259 - 11891139

Intron Length:

5881

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

TTGGTAGTAACA

Flanking Amino Acid:

LFMLSSRNNQVWHQHLGKHF

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

71.8

0.49

0.9

65.1

36.4

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

46.3

-0.2

2.3

63.46

43.2

Associated Gene:

Gene:

TMEM60

Ensembl Gene ID:

ENSAPLG00000001390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025142

11881759 - 11891420

9662