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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118855835_118856962_F

Intron Information:

Intron Rank:
148056
Intron Class:
major
Intron Phase:
Intron Coordinates:
118855835 - 118856962
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.8
35.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
88.3
0.86
0.8
89.3
25.7
Minor 5ss
34.8
-1.7
3.1
50.1
46.1
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019567
118855116 - 118857958
2843