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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118859943_118868196_F

Intron Information:

Intron Rank:
134534
Intron Class:
major
Intron Phase:
Intron Coordinates:
118859943 - 118868196
Intron Length:
8254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATGATTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GATCTCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.2
0.54
0.9
69.8
40.9
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
49.7
0.06
1.6
66.93
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037031
118859361 - 118868588
9228