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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11895126_11895208_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11895126 - 11895208
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAGTTTTCATCC
Flanking Amino Acid:
LDLHEPPLSQCVQWVDDAKL
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
88.8
0.87
0.7
81.3
30.7
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
46.5
-0.2
1.7
53.47
38.4

Associated Gene:

Gene:
RSBN1L
Ensembl Gene ID:
ENSAPLG00000012261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012765
11894469 - 11919307
24839
ENSAPLT00000012764
11893444 - 11919376
25933