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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11901779_11905106_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11901779 - 11905106
Intron Length:
3328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACAC
Flanking Amino Acid:
DMPKSPFKRKRTTNEIKNLQ
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
75.2
37.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84
0.76
0.8
80.4
30.5
Minor 5ss
38.5
-1.3
3
50
46.2
Minor BPS
66.9
0.51
1.7
79.08
36.2

Associated Gene:

Gene:
RSBN1L
Ensembl Gene ID:
ENSAPLG00000012261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012765
11894469 - 11919307
24839
ENSAPLT00000012764
11893444 - 11919376
25933