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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119303948_119306317_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119303948 - 119306317
Intron Length:
2370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTAAATCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATTTAAAT
Flanking Amino Acid:
AEMIGRLYVKQPLKATISPR
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.7
0.65
0.9
74.8
39.7
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
62.8
0.48
1.7
82.06
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347