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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119306594_119309140_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119306594 - 119309140
Intron Length:
2547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
AAGTACTCATCT
Flanking Amino Acid:
AQDYVQVVLEDGTPKIISAF
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
72.2
39.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.4
0.64
0.9
76
32.5
Minor 5ss
29.1
-2.4
2.8
35.6
41
Minor BPS
47.5
-0.1
2
65.32
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347