About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119309438_119310260_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119309438 - 119310260
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTTGTC
5'SS Class:
major
3'SS Sequence:
TTTACCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCCCTTTTACC
Flanking Amino Acid:
VLYQARINVRGPASIRPMKN
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
68.7
36.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80
0.68
0.9
70.8
39.6
Minor 5ss
30.8
-2.2
3.4
43.6
44.1
Minor BPS
62.6
0.38
1.6
72.03
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347