About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119331777_119335632_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119331777 - 119335632
Intron Length:
3856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTC
5'SS Class:
strong_major
3'SS Sequence:
GGTCCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTAACTAACC
Flanking Amino Acid:
VPTIVWKYSKGAGVPQFQPI
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.9
34.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
62
0.27
1
58.7
42.1
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
49.9
-0
2.1
69.64
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347