About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119392468_119393793_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119392468 - 119393793
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATACTTCAAAT
Flanking Amino Acid:
VIYWANLLDGELGEIKNVTT
Intron Amino Acid Position:
996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.7
81.1
30.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
53.6
0.19
1.7
70.47
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347