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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119393950_119400424_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119393950 - 119400424
Intron Length:
6475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTTCTCTGACCC
Flanking Amino Acid:
EQIFTRTKEDVPGPPAGVKA
Intron Amino Acid Position:
1048

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
91.5
0.93
0.6
84.7
30.2
Minor 5ss
34.1
-1.8
3.3
45.5
44.6
Minor BPS
50
-0
1.8
64.1
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347