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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119423412_119424258_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
119423412 - 119424258
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCAGC
5'SS Class:
major
3'SS Sequence:
TCCTGTGAGGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTTCTTTAATG
Flanking Amino Acid:
PAPTVKWMKDSNGTPSLVMI
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
67.1
44.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
56.8
0.15
1.1
53.9
40.6
Minor 5ss
45.3
-0.5
2.7
61.2
43.3
Minor BPS
73
0.58
1.3
69.15
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347