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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119441296_119446955_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119441296 - 119446955
Intron Length:
5660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTAGGCTGAATC
Flanking Amino Acid:
DAKSLAEMLMSKNTRTSDTL
Intron Amino Acid Position:
1500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
49.5
-0
2
63.87
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030803
119297898 - 119476244
178347