Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119458049_119475903_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119458049 - 119475903

Intron Length:

17855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACGTAA

U12 Branch Point Sequence:

CTATACGTAAGG

Flanking Amino Acid:

NMAVPKAHRPGDLVHLPPYL

Intron Amino Acid Position:

1756

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.8

76.8

33.7

Major BPS

49.8

-0

1.3

49.6

37.6

Major PPT

85.4

0.8

77.5

36.9

Minor 5ss

28.2

-2.5

3.1

38.3

46.6

Minor BPS

43.9

-0.6

2.4

52.77

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030803

119297898 - 119476244

178347