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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119592207_119596827_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
119592207 - 119596827
Intron Length:
4621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGGAACTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
AGTCCTGGAACT
Flanking Amino Acid:
ITVFFVNSTSGEMLPWWLEH
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
46
-0.2
1.7
50.7
41.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
48
-0
2.1
69.72
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024259
119591926 - 119602521
10596