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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119597137_119598188_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119597137 - 119598188
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTATTCTGAAGG
Flanking Amino Acid:
ESSFAFLSVQVNGSLFIKNS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.9
0.63
0.7
72.3
26
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
49.7
-0.1
1.9
56.41
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024259
119591926 - 119602521
10596