About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11964470_11965069_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11964470 - 11965069
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTACA
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAATATTTAATA
Flanking Amino Acid:
SEFPTEITDMGFGNRCGKPR
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
73.5
37.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.7
0.67
0.8
77.9
36.6
Minor 5ss
35.6
-1.6
2.6
35.7
40.5
Minor BPS
60.8
0.33
1.4
64.98
34.9

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183