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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11966578_11967573_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11966578 - 11967573
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCATTAACA
Flanking Amino Acid:
QHLPEQTISTGLKTTSPVLP
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
74.7
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.8
0.63
0.9
73.7
34.6
Minor 5ss
34.5
-1.8
2.9
42.3
44.6
Minor BPS
77.2
0.85
1.5
84.69
35.1

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183