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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11967663_11968869_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11967663 - 11968869
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TAATTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTGGTTTAATT
Flanking Amino Acid:
PESFILASEPSTPLPKPVMI
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
76.4
0.59
0.9
69.9
40.9
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
64.2
0.53
1.8
82.98
39.3

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183