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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11968948_11970662_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11968948 - 11970662
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACT
Flanking Amino Acid:
TALTCSEDGKDADTSEDSSP
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68.5
0.42
1
66.8
44
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183