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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119695831_119707161_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119695831 - 119707161
Intron Length:
11331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
RGLRASVCAQISRLLQKDAE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
84.8
29.6
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027369
119695471 - 119707479
12009