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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119707401_119707584_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119707401 - 119707584
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGTG
5'SS Class:
major
3'SS Sequence:
TTCCTCTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCCCCTCTAACT
Flanking Amino Acid:
VLVQELEQHQLLPKRLDWEG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
68.8
42.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
72.8
0.51
0.8
72.8
32
Minor 5ss
37.8
-1.4
3.1
49.2
47.1
Minor BPS
58.3
0.34
1.7
73.75
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018182
119706876 - 119711874
4999