Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119707645_119710707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119707645 - 119710707

Intron Length:

3063

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TAATATCTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

AAAACTTTAATA

Flanking Amino Acid:

NEHYRSYEELVLSNKHVAPD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

77.2

37.6

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

68.1

0.41

1.1

66.6

44.3

Minor 5ss

-1.3

3.3

54.4

43.7

Minor BPS

63.9

0.43

1.2

64.78

35.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019022

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018182

119706876 - 119711874

4999