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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11971631_11980143_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11971631 - 11980143
Intron Length:
8513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
AAATGCAGAAAA
Flanking Amino Acid:
SPPPKPPRTRSCLVEGDAKE
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
41.8
-0.6
2
51.82
38.6

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183