Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119755551_119761180_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119755551 - 119761180

Intron Length:

5630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

AATCTTTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GCATTTTTAAAT

Flanking Amino Acid:

RKGKTKIFRQESTSEKTGQS

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

78.9

0.65

0.8

73.9

35.7

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

61.6

0.44

1.4

70.2

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017115

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032471

119753952 - 119762325

8374