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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119765609_119767034_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119765609 - 119767034
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGGT
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTTATAAAT
Flanking Amino Acid:
FVVAVGHNAAAFLSSFILDS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
67.1
44.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
36.7
-1.5
3.7
55.4
48.8
Minor BPS
57.9
0.33
1.7
77.39
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043448
119765271 - 119771872
6602