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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119769799_119770655_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119769799 - 119770655
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
CACTTGTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
PNIVRDLPAAVLSYCQVWQI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
60.4
39.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.1
0.41
1
65.9
39.7
Minor 5ss
46.8
-0.3
2.5
58.9
40.8
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043448
119765271 - 119771872
6602